Doctoral Theses
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Supervised and Unsupervised Methods for Transcriptional Sequencing Data.
Zach Maas, 2024
Investigating exogenous stressors impact on transcription in population with Down syndrome.
Jessica Westfall, 2023
How transcription factors define cell identity and p53 defends the genome.
Taylor Jones, 2023
Effects of aging on skeletal muscle stem cells revealed by single-cell transcriptomics and lineage tracing.
Jesse Kurland, 2023
RNA Turnover and Trisomy: Inferring RNA Decay Rates Throughout the Interferon Response in Down Syndrome.
Samuel Hunter, 2023
No place like home: Hair follicle stem cell’s departure from niche environment during aging.
Chi Zhang, 2022
Responding to Emerging Infectious Diseases with Big Data, Rapid Diagnostics, and Stem Cell Technology.
Qing Yang, 2022
Hide and Seq: Novel approaches to RNA-sequencing data with a focus on neurodegenerative disease.
Marko Melnick, 2021
Mechanisms of Gene Regulation: Exploring the Activity ofTranscription Factors and Mediator Kinases.
Jonathan Rubin, 2020
Inferring mechanisms of toxicity from differential genomicsand semantic knowledge representations.
Ignacio Tripodi, 2020
Pathways of Adaptation: A large-scale expression and genotypic analysis of the influence of polyploidy on the evolution of yeast grown in a sub-optimal carbon source.
Amber Scott, 2017
Stochastic modeling of RNA polymerase predicts transcription factor activity.
Joey Azofeifa, 2017
A Computational and Evolutionary Approach to Understanding Cryptic Unstable Transcripts in Yeast.
Jessica Vera, 2016
Cell-intrinsic mechanisms governing stem cell quiescence and regulating cancer progression in mammalian skin.
Li Wang, 2015
Regulatory organization and transcriptional response of S. Chlorophenolicum.
Joe Rokicki, 2015
Identification and characterization of functional regulatory variants in Saccharomyces cerevisiae.
Timothy Read, 2015
A Simulation modeling framework to study transcriptional regulation through the dynamic changes in the configuration of DNA binding factors.
David Knox, 2015
Masters Theses
Efficient Algorithms for Large Data Sets of Genomic Sequences in Microbial Community Analysis.
David Knox, 2010
Undergraduate Theses
Exploring Transcriptional Regulation in Saccharomyces cerevisiae: from Binding Motifs to ncRNA.
Anna Lee, 2014
Comparison of transcription factor binding sites from ChIP-seq experiments.
Colin Diesh, 2013
Analysis of the Impact of Ploidy on the Genotypic Effects of Directed Evolution.
Phillip Richmond, 2012